PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011466
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LSD
Protein Properties Length: 620aa    MW: 68670.6 Da    PI: 3.9012
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-28792PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD122.32.2e-07526547122
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalC 22 
                Cg+Cr lLsYP GA++V C +C
  Lsa011466 526 CGSCRRLLSYPKGARYVECGCC 547
                ********************** PP

2zf-LSD1391.3e-12564587124
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                CggC++lL+YP+GAp VRC +C t
  Lsa011466 564 CGGCDVLLMYPYGAPKVRCVNCST 587
                **********************76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.7E-10523547IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-6526547IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.2E-9561589IPR005735Zinc finger, LSD1-type
PfamPF069435.4E-10564587IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MEEDDGAPSG RSSPPTPKKV KLESEEPKEL LKAEDHSEDE SEEIEEDEDE EEDGDGSPQL  60
PPLLDMIDLP PASTLPPTPP LPSSPRDLNM EQQDSEDEGP PPGWDNTYQL QEQVEHMLTP  120
AAVSAISSDI RMEDLQQDGR NGEDAAPELI ASDMKVEEQD SEDEGPPPGW DSKCLPETEL  180
QVAYPQITQS DIKTEDLQED IRNGNGATTA PELVPSDMKV EEQDSEEDER PPPGWDSKCQ  240
PEPELQMPFP TPTITQSDMK TEEVQQDAPQ PQLVLVPSDM KVEEQDSEED EGPPPGWDSK  300
GQPQPKSTDM QTEDAQQDAW NGQHPTPQPQ LVLSDVKVEE QDSEEDEGPP PGWDQPQPES  360
TDIKTTEEIQ HDVQNGDGPQ PQPQQPHDGP APALELAPSG CEKSAIKVEE KDSETDERAP  420
PGWDSKCTPP SESKIEDDQQ KQQDEDGQGQ GQGWGSSSTP QPPPPHSIGE RMGTEFEQKQ  480
KNVEAAVVVE LERPQSQPQP PSRQQPPSTT TKKTNNPIPE MGQMVCGSCR RLLSYPKGAR  540
YVECGCCLEE NYVLEEHEVG QVICGGCDVL LMYPYGAPKV RCVNCSTETE IGDQNRRPPL  600
SEQQRRARRH LRRVQTGFKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.19e-33lsd one like 2